Capital Medical University has 14 Clinical Medical College (of which 13 Clinical Medical College is an affiliated hospital). Including xuanwu hospital (First Clinical Medical College), affiliated Beijing Friendship Hospital (Second Clinical Medical College), affiliated Beijing Chaoyang Hospital (Third Clinical Medical College), affiliated Beijing Tongren Hospital (Fourth Clinical Medical College), affiliated Beijing Tiantan Hospital (Fifth Clinical Medical College), affiliated Beijing anzhen hospital (Sixth Clinical Medical College), affiliated Fuxing Hospital (Eighth Clinical Medical College), affiliated Beijing You 'an Hospital (Ninth Clinical Medical College), Affiliated Beijing Children's Hospital (Pediatric Medical College), affiliated Beijing Stomatological Hospital (Stomatological Medical College), affiliated Beijing Anding Hospital (Mental Health College), affiliated Beijing Maternity Hospital (Obstetrics and Gynecology Medical College), affiliated Beijing Hospital of Traditional Chinese Medicine (Clinical Medical College of Traditional Chinese Medicine), Rehabilitation Medical College (China Rehabilitation Research Center), and preventive medicine teaching base (Beijing Center for Disease Control and Prevention).

In 2006, Peking Union Medical College was renamed Peking Union Medical College (Tsinghua University Medical Department). The school has six affiliated hospitals: Peking Union Medical College Hospital, Fuwai Cardiovascular Hospital, Cancer Hospital of China Academy of Medical Sciences, Plastic Surgery Hospital of China Academy of Medical Sciences, Tianjin Hematology Hospital and Nanjing Dermatology Hospital. In addition, it also has teaching hospitals such as Beijing Tiantan Hospital (jointly built with Beijing * * *), General Hospital of China Aerospace Science and Technology Corporation and General Hospital of the Ministry of Coal Industry.